Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000797495_04217 | nusA | GCA_000797495_04217 | GCA_000797495_05328 | Unannotated protein. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.997 |
GCA_000797495_04217 | nusG | GCA_000797495_04217 | GCA_000797495_04868 | Unannotated protein. | Unannotated protein; Participates in transcription elongation, termination and antitermination. | 0.945 |
GCA_000797495_04217 | pnp | GCA_000797495_04217 | GCA_000797495_05338 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.792 |
GCA_000797495_04217 | prfA | GCA_000797495_04217 | GCA_000797495_00383 | Unannotated protein. | Unannotated protein; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.637 |
GCA_000797495_04217 | rho | GCA_000797495_04217 | GCA_000797495_00387 | Unannotated protein. | Unannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.932 |
GCA_000797495_04217 | rpmE | GCA_000797495_04217 | GCA_000797495_00386 | Unannotated protein. | Unannotated protein; Binds the 23S rRNA. | 0.796 |
GCA_000797495_04217 | rpoA | GCA_000797495_04217 | GCA_000797495_04977 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.731 |
GCA_000797495_04217 | rpoB | GCA_000797495_04217 | GCA_000797495_04881 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
GCA_000797495_04217 | rpoC | GCA_000797495_04217 | GCA_000797495_04882 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
GCA_000797495_04217 | rpoZ | GCA_000797495_04217 | GCA_000797495_04583 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
nusA | GCA_000797495_04217 | GCA_000797495_05328 | GCA_000797495_04217 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein. | 0.997 |
nusA | nusG | GCA_000797495_05328 | GCA_000797495_04868 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; Participates in transcription elongation, termination and antitermination. | 0.975 |
nusA | pnp | GCA_000797495_05328 | GCA_000797495_05338 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.925 |
nusA | rho | GCA_000797495_05328 | GCA_000797495_00387 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.944 |
nusA | rpmE | GCA_000797495_05328 | GCA_000797495_00386 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; Binds the 23S rRNA. | 0.709 |
nusA | rpoA | GCA_000797495_05328 | GCA_000797495_04977 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
nusA | rpoB | GCA_000797495_05328 | GCA_000797495_04881 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
nusA | rpoC | GCA_000797495_05328 | GCA_000797495_04882 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
nusA | rpoZ | GCA_000797495_05328 | GCA_000797495_04583 | Unannotated protein; Participates in both transcription termination and antitermination. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.956 |
nusG | GCA_000797495_04217 | GCA_000797495_04868 | GCA_000797495_04217 | Unannotated protein; Participates in transcription elongation, termination and antitermination. | Unannotated protein. | 0.945 |
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