STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytR_5Unannotated protein. (557 aa)    
Predicted Functional Partners:
GCA_000797495_01020
Unannotated protein.
 
     0.849
ywqD_1
Unannotated protein.
 
  
 0.757
ywqD_2
Unannotated protein.
 
  
 0.728
ywqE_2
Unannotated protein.
  
  
 0.643
GCA_000797495_01024
Unannotated protein.
       0.636
GCA_000797495_01018
Unannotated protein; Belongs to the membrane-bound acyltransferase family.
       0.613
GCA_000797495_01019
Unannotated protein.
       0.613
GCA_000797495_01026
Unannotated protein.
     
 0.610
GCA_000797495_01027
Unannotated protein.
       0.573
GCA_000797495_01030
Unannotated protein.
     
 0.537
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.