STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjfF_1Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (326 aa)    
Predicted Functional Partners:
araG_3
Unannotated protein.
  0.996
ytfT_1
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.983
ytfQ_3
Unannotated protein.
 
  0.929
ytfQ_2
Unannotated protein.
  0.928
ytfQ_4
Unannotated protein.
 
  0.858
ytfQ_5
Unannotated protein.
  
  0.854
mglA_19
Unannotated protein.
 
  0.845
rbsB_5
Unannotated protein.
 
  0.752
rbsB_15
Unannotated protein.
 
  0.720
yphF_3
Unannotated protein.
  
  0.701
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.