STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swrCUnannotated protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1398 aa)    
Predicted Functional Partners:
barA_4
Unannotated protein.
   
 0.942
barA_3
Unannotated protein.
 
 
 0.905
secD
Unannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.900
yknX
Unannotated protein.
 
 0.897
GCA_000797495_05188
Unannotated protein.
 
 0.896
rpfC_3
Unannotated protein.
 
 
 0.884
GCA_000797495_05108
Unannotated protein.
 
  
 0.874
czcB
Unannotated protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.873
GCA_000797495_03954
Unannotated protein.
  
 0.872
GCA_000797495_05520
Unannotated protein.
  
 0.872
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.