STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000797495_03328Unannotated protein. (1739 aa)    
Predicted Functional Partners:
msmE_23
Unannotated protein.
 
     0.850
GCA_000797495_02085
Unannotated protein.
 
  
  0.791
xynD
Unannotated protein.
  
  
  0.762
GCA_000797495_01313
Unannotated protein.
  
     0.748
GCA_000797495_04687
Unannotated protein.
  
     0.748
GCA_000797495_01312
Unannotated protein.
  
     0.742
GCA_000797495_00532
Unannotated protein.
  
     0.740
GCA_000797495_04339
Unannotated protein.
  
  
  0.722
GCA_000797495_01876
Unannotated protein.
  
  
  0.721
ebgA_4
Unannotated protein.
  
  
  0.717
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.