STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000797495_03420Unannotated protein. (368 aa)    
Predicted Functional Partners:
barA_4
Unannotated protein.
  
 
 0.989
rsbU
Unannotated protein.
  
 0.954
btrV
Unannotated protein; Belongs to the anti-sigma-factor antagonist family.
  
 0.944
spoIIAA
Unannotated protein; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.785
sigF_1
Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.773
btrW
Unannotated protein.
       0.773
GCA_000797495_00293
Unannotated protein.
  
 
 0.772
rpfC_3
Unannotated protein.
  
 
 0.737
GCA_000797495_00520
Unannotated protein.
  
 
 0.732
sigM_3
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.721
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.