Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000797495_03729 | GCA_000797495_03730 | GCA_000797495_03729 | GCA_000797495_03730 | Unannotated protein. | Unannotated protein. | 0.705 |
GCA_000797495_03729 | patB_2 | GCA_000797495_03729 | GCA_000797495_03731 | Unannotated protein. | Unannotated protein. | 0.688 |
GCA_000797495_03729 | pepT | GCA_000797495_03729 | GCA_000797495_03732 | Unannotated protein. | Unannotated protein. | 0.529 |
GCA_000797495_03730 | GCA_000797495_03729 | GCA_000797495_03730 | GCA_000797495_03729 | Unannotated protein. | Unannotated protein. | 0.705 |
GCA_000797495_03730 | patB_2 | GCA_000797495_03730 | GCA_000797495_03731 | Unannotated protein. | Unannotated protein. | 0.768 |
GCA_000797495_03730 | pepT | GCA_000797495_03730 | GCA_000797495_03732 | Unannotated protein. | Unannotated protein. | 0.587 |
GCA_000797495_04637 | guaB | GCA_000797495_04637 | GCA_000797495_03081 | Unannotated protein. | Unannotated protein. | 0.724 |
GCA_000797495_04637 | pepT | GCA_000797495_04637 | GCA_000797495_03732 | Unannotated protein. | Unannotated protein. | 0.523 |
ddl | metB_1 | GCA_000797495_01355 | GCA_000797495_05780 | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | Unannotated protein. | 0.700 |
ddl | pepT | GCA_000797495_01355 | GCA_000797495_03732 | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | Unannotated protein. | 0.481 |
glyA | guaB | GCA_000797495_03957 | GCA_000797495_03081 | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Unannotated protein. | 0.889 |
glyA | metB_1 | GCA_000797495_03957 | GCA_000797495_05780 | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Unannotated protein. | 0.652 |
glyA | pepT | GCA_000797495_03957 | GCA_000797495_03732 | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Unannotated protein. | 0.553 |
guaB | GCA_000797495_04637 | GCA_000797495_03081 | GCA_000797495_04637 | Unannotated protein. | Unannotated protein. | 0.724 |
guaB | glyA | GCA_000797495_03081 | GCA_000797495_03957 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.889 |
guaB | metB_1 | GCA_000797495_03081 | GCA_000797495_05780 | Unannotated protein. | Unannotated protein. | 0.595 |
guaB | pepQ | GCA_000797495_03081 | GCA_000797495_01901 | Unannotated protein. | Unannotated protein. | 0.724 |
guaB | pepT | GCA_000797495_03081 | GCA_000797495_03732 | Unannotated protein. | Unannotated protein. | 0.620 |
metB_1 | ddl | GCA_000797495_05780 | GCA_000797495_01355 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.700 |
metB_1 | glyA | GCA_000797495_05780 | GCA_000797495_03957 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.652 |
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