Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000797495_02108 | GCA_000797495_03697 | GCA_000797495_02108 | GCA_000797495_03697 | Unannotated protein. | Unannotated protein; Belongs to the FPP/GGPP synthase family. | 0.740 |
GCA_000797495_02108 | GCA_000797495_05449 | GCA_000797495_02108 | GCA_000797495_05449 | Unannotated protein. | Unannotated protein. | 0.721 |
GCA_000797495_03110 | GCA_000797495_05449 | GCA_000797495_03110 | GCA_000797495_05449 | Unannotated protein. | Unannotated protein. | 0.934 |
GCA_000797495_03110 | nifJ | GCA_000797495_03110 | GCA_000797495_03826 | Unannotated protein. | Unannotated protein. | 0.477 |
GCA_000797495_03110 | psd | GCA_000797495_03110 | GCA_000797495_05452 | Unannotated protein. | Unannotated protein; Belongs to the phosphatidylserine decarboxylase family. | 0.458 |
GCA_000797495_03697 | GCA_000797495_02108 | GCA_000797495_03697 | GCA_000797495_02108 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein. | 0.740 |
GCA_000797495_03697 | GCA_000797495_05449 | GCA_000797495_03697 | GCA_000797495_05449 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein. | 0.815 |
GCA_000797495_03697 | ftsY | GCA_000797495_03697 | GCA_000797495_05447 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.472 |
GCA_000797495_05449 | GCA_000797495_02108 | GCA_000797495_05449 | GCA_000797495_02108 | Unannotated protein. | Unannotated protein. | 0.721 |
GCA_000797495_05449 | GCA_000797495_03110 | GCA_000797495_05449 | GCA_000797495_03110 | Unannotated protein. | Unannotated protein. | 0.934 |
GCA_000797495_05449 | GCA_000797495_03697 | GCA_000797495_05449 | GCA_000797495_03697 | Unannotated protein. | Unannotated protein; Belongs to the FPP/GGPP synthase family. | 0.815 |
GCA_000797495_05449 | GCA_000797495_05451 | GCA_000797495_05449 | GCA_000797495_05451 | Unannotated protein. | Unannotated protein. | 0.890 |
GCA_000797495_05449 | adhE_7 | GCA_000797495_05449 | GCA_000797495_05063 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.744 |
GCA_000797495_05449 | ftsY | GCA_000797495_05449 | GCA_000797495_05447 | Unannotated protein. | Unannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.707 |
GCA_000797495_05449 | ilvA | GCA_000797495_05449 | GCA_000797495_05448 | Unannotated protein. | Unannotated protein. | 0.752 |
GCA_000797495_05449 | mprF | GCA_000797495_05449 | GCA_000797495_05450 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.827 |
GCA_000797495_05449 | nifJ | GCA_000797495_05449 | GCA_000797495_03826 | Unannotated protein. | Unannotated protein. | 0.898 |
GCA_000797495_05449 | psd | GCA_000797495_05449 | GCA_000797495_05452 | Unannotated protein. | Unannotated protein; Belongs to the phosphatidylserine decarboxylase family. | 0.820 |
GCA_000797495_05451 | GCA_000797495_05449 | GCA_000797495_05451 | GCA_000797495_05449 | Unannotated protein. | Unannotated protein. | 0.890 |
GCA_000797495_05451 | ftsY | GCA_000797495_05451 | GCA_000797495_05447 | Unannotated protein. | Unannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.560 |
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