Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000797495_01407 | GCA_000797495_03109 | GCA_000797495_01407 | GCA_000797495_03109 | Unannotated protein. | Unannotated protein. | 0.748 |
GCA_000797495_01407 | prs_2 | GCA_000797495_01407 | GCA_000797495_05468 | Unannotated protein. | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.854 |
GCA_000797495_01407 | rbsK_2 | GCA_000797495_01407 | GCA_000797495_04938 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.832 |
GCA_000797495_01407 | rbsK_3 | GCA_000797495_01407 | GCA_000797495_05735 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.878 |
GCA_000797495_01407 | ywlE | GCA_000797495_01407 | GCA_000797495_00137 | Unannotated protein. | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.867 |
GCA_000797495_01407 | ywlF | GCA_000797495_01407 | GCA_000797495_00136 | Unannotated protein. | Unannotated protein. | 0.931 |
GCA_000797495_01804 | prs_2 | GCA_000797495_01804 | GCA_000797495_05468 | Unannotated protein. | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.808 |
GCA_000797495_02968 | prs_2 | GCA_000797495_02968 | GCA_000797495_05468 | Unannotated protein. | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.813 |
GCA_000797495_03109 | GCA_000797495_01407 | GCA_000797495_03109 | GCA_000797495_01407 | Unannotated protein. | Unannotated protein. | 0.748 |
GCA_000797495_03109 | prs_2 | GCA_000797495_03109 | GCA_000797495_05468 | Unannotated protein. | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.931 |
hisG | prs_2 | GCA_000797495_04448 | GCA_000797495_05468 | Unannotated protein; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.825 |
prs_2 | GCA_000797495_01407 | GCA_000797495_05468 | GCA_000797495_01407 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein. | 0.854 |
prs_2 | GCA_000797495_01804 | GCA_000797495_05468 | GCA_000797495_01804 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein. | 0.808 |
prs_2 | GCA_000797495_02968 | GCA_000797495_05468 | GCA_000797495_02968 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein. | 0.813 |
prs_2 | GCA_000797495_03109 | GCA_000797495_05468 | GCA_000797495_03109 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein. | 0.931 |
prs_2 | hisG | GCA_000797495_05468 | GCA_000797495_04448 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.825 |
prs_2 | pyrE | GCA_000797495_05468 | GCA_000797495_04175 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.815 |
prs_2 | rbsK_2 | GCA_000797495_05468 | GCA_000797495_04938 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.824 |
prs_2 | rbsK_3 | GCA_000797495_05468 | GCA_000797495_05735 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.890 |
prs_2 | ywlE | GCA_000797495_05468 | GCA_000797495_00137 | Unannotated protein; Belongs to the ribose-phosphate pyrophosphokinase family. | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.822 |
page 1 of 3