STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmE_2Unannotated protein. (484 aa)    
Predicted Functional Partners:
sugB_1
Unannotated protein.
 
  0.930
ugpA_1
Unannotated protein.
 
  0.929
GCA_000797495_05561
Unannotated protein.
 
     0.865
GCA_000797495_02117
Unannotated protein.
  
     0.769
GCA_000797495_03265
Unannotated protein.
  
     0.769
adaA_2
Unannotated protein.
 
     0.764
GCA_000797495_05557
Unannotated protein.
  
     0.703
GCA_000797495_05099
Unannotated protein.
  
     0.628
GCA_000797495_02251
Unannotated protein.
  
     0.623
araQ_79
Unannotated protein.
  
  0.543
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.