STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1646_822176Uncharacterized protein. (825 aa)    
Predicted Functional Partners:
C1646_775827
Kinase-like domain-containing protein.
    
 0.493
C1646_764325
WD40-repeat-containing domain protein.
    
  0.459
C1646_769294
TAF domain-containing protein.
    
  0.442
C1646_739561
Uncharacterized protein.
    
 0.435
C1646_821963
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.433
C1646_625226
Transcription initiation factor TFIID subunit A-domain-containing protein.
    
  0.433
C1646_695777
Transcription initiation factor IID, 18kD subunit-domain-containing protein.
    
  0.430
C1646_743908
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
  0.427
C1646_679624
Histone acetyltransferases subunit 3-domain-containing protein.
    
  0.417
C1646_493185
Uncharacterized protein.
    
  0.416
Your Current Organism:
Rhizophagus sp. MUCL43196
NCBI taxonomy Id: 1803374
Other names: R. sp. MUCL 43196, Rhizophagus sp. MUCL 43196, Rhizophagus sp. MUCL-43196
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