STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1646_701054DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1860 aa)    
Predicted Functional Partners:
C1646_733938
S1 motif domain-containing protein.
  
 
 0.999
C1646_624868
TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.999
C1646_624006
RNA polymerase, subunit omega/K/RPB6.
    
 0.999
C1646_755632
Uncharacterized protein.
   
 0.999
C1646_690326
DNA-directed RNA polymerase II polypeptide.
    
 0.999
C1646_665659
Cyclin-like protein.
    
 0.999
C1646_689086
RNA polymerase Rpb5, C-terminal domain-containing protein.
    
 0.999
C1646_619550
DNA-directed RNA polymerase.
    
 0.999
C1646_678798
DNA directed RNA polymerase.
    
 0.999
C1646_660808
RNA polymerase.
    
 0.999
Your Current Organism:
Rhizophagus sp. MUCL43196
NCBI taxonomy Id: 1803374
Other names: R. sp. MUCL 43196, Rhizophagus sp. MUCL 43196, Rhizophagus sp. MUCL-43196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.