C1646_810900 protein (Rhizophagus sp. MUCL43196)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1646_810900

S-adenosyl-L-methionine-dependent methyltransferase. (306 aa)

Predicted Functional Partners:

C1646_717555

0.569

C1646_703093

0.565

C1646_732975

0.550

C1646_719652

0.548

C1646_357732

0.548

C1646_733321

0.548

RPS1

0.545

C1646_747285

0.545

C1646_749239

0.541

C1646_712767

0.533

Your Current Organism:

Rhizophagus sp. MUCL43196

NCBI taxonomy Id: 1803374
Other names: R. sp. MUCL 43196, Rhizophagus sp. MUCL 43196, Rhizophagus sp. MUCL-43196

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1646_357732	C1646_703093	A0A372QJJ6	A0A372R0A8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Bystin-domain-containing protein.	0.996
C1646_357732	C1646_712767	A0A372QJJ6	A0A372QQ61	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
C1646_357732	C1646_717555	A0A372QJJ6	A0A372QJG5	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Bms1-type G domain-containing protein.	0.974
C1646_357732	C1646_719652	A0A372QJJ6	A0A372QI93	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
C1646_357732	C1646_732975	A0A372QJJ6	A0A372RNR9	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
C1646_357732	C1646_733321	A0A372QJJ6	A0A372RCJ9	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	KH domain-containing protein.	0.982
C1646_357732	C1646_747285	A0A372QJJ6	A0A372QCS4	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
C1646_357732	C1646_749239	A0A372QJJ6	A0A372RXB6	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S27.	0.999
C1646_357732	C1646_810900	A0A372QJJ6	A0A372RJU8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	S-adenosyl-L-methionine-dependent methyltransferase.	0.548
C1646_357732	RPS1	A0A372QJJ6	A0A372Q702	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
C1646_703093	C1646_357732	A0A372R0A8	A0A372QJJ6	Bystin-domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.996
C1646_703093	C1646_712767	A0A372R0A8	A0A372QQ61	Bystin-domain-containing protein.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
C1646_703093	C1646_717555	A0A372R0A8	A0A372QJG5	Bystin-domain-containing protein.	Bms1-type G domain-containing protein.	0.999
C1646_703093	C1646_719652	A0A372R0A8	A0A372QI93	Bystin-domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
C1646_703093	C1646_732975	A0A372R0A8	A0A372RNR9	Bystin-domain-containing protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.987
C1646_703093	C1646_733321	A0A372R0A8	A0A372RCJ9	Bystin-domain-containing protein.	KH domain-containing protein.	0.999
C1646_703093	C1646_747285	A0A372R0A8	A0A372QCS4	Bystin-domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
C1646_703093	C1646_749239	A0A372R0A8	A0A372RXB6	Bystin-domain-containing protein.	40S ribosomal protein S27.	0.985
C1646_703093	C1646_810900	A0A372R0A8	A0A372RJU8	Bystin-domain-containing protein.	S-adenosyl-L-methionine-dependent methyltransferase.	0.565
C1646_703093	RPS1	A0A372R0A8	A0A372Q702	Bystin-domain-containing protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.995