STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLD61758.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (127 aa)    
Predicted Functional Partners:
OLD63050.1
Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
OLD63047.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.871
AUI53_03065
Dihydroorotate dehydrogenase; Metagenomic; derived from metagenome: soil metagenome.
   
 0.852
AUI53_03075
Formate dehydrogenase-N subunit alpha; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.844
OLD62571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.839
OLD61200.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.837
AUI53_00230
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.812
OLD62743.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.812
OLD61304.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
OLD60989.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.742
Your Current Organism:
Acidobacteria bacterium 13140CM2607
NCBI taxonomy Id: 1803443
Other names: A. bacterium 13_1_40CM_2_60_7, Acidobacteria bacterium 13_1_40CM_2_60_7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.