JCGZ_18308 protein (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JCGZ_18308

Uncharacterized protein. (555 aa)

Predicted Functional Partners:

JCGZ_06536

0.679

JCGZ_24695

0.648

JCGZ_17342

0.647

JCGZ_07044

0.625

JCGZ_07094

0.552

JCGZ_15603

0.532

JCGZ_10235

0.532

JCGZ_02627

0.530

JCGZ_23666

0.506

JCGZ_24708

0.506

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02627	JCGZ_07094	A0A067KTX3	A0A067KET0	Uncharacterized protein.	Uncharacterized protein.	0.464
JCGZ_02627	JCGZ_10235	A0A067KTX3	A0A067LNG5	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.830
JCGZ_02627	JCGZ_15603	A0A067KTX3	A0A067KYB5	Uncharacterized protein.	Uncharacterized protein.	0.830
JCGZ_02627	JCGZ_18308	A0A067KTX3	A0A067JZT3	Uncharacterized protein.	Uncharacterized protein.	0.530
JCGZ_06536	JCGZ_07044	A0A067LHE0	A0A067KEN7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.992
JCGZ_06536	JCGZ_07094	A0A067LHE0	A0A067KET0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.982
JCGZ_06536	JCGZ_10235	A0A067LHE0	A0A067LNG5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	SGF29 C-terminal domain-containing protein.	0.974
JCGZ_06536	JCGZ_15603	A0A067LHE0	A0A067KYB5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.974
JCGZ_06536	JCGZ_17342	A0A067LHE0	A0A067LLV5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	SAGA-associated factor 11.	0.868
JCGZ_06536	JCGZ_18308	A0A067LHE0	A0A067JZT3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.679
JCGZ_06536	JCGZ_23666	A0A067LHE0	A0A067L2R4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	TFIID_20kDa domain-containing protein.	0.974
JCGZ_06536	JCGZ_24695	A0A067LHE0	A0A067KWX3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.993
JCGZ_06536	JCGZ_24708	A0A067LHE0	A0A067L9H2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	TFIID_20kDa domain-containing protein.	0.974
JCGZ_07044	JCGZ_06536	A0A067KEN7	A0A067LHE0	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.992
JCGZ_07044	JCGZ_07094	A0A067KEN7	A0A067KET0	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	Uncharacterized protein.	0.993
JCGZ_07044	JCGZ_10235	A0A067KEN7	A0A067LNG5	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	SGF29 C-terminal domain-containing protein.	0.972
JCGZ_07044	JCGZ_15603	A0A067KEN7	A0A067KYB5	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	Uncharacterized protein.	0.972
JCGZ_07044	JCGZ_17342	A0A067KEN7	A0A067LLV5	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	SAGA-associated factor 11.	0.894
JCGZ_07044	JCGZ_18308	A0A067KEN7	A0A067JZT3	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	Uncharacterized protein.	0.625
JCGZ_07044	JCGZ_23666	A0A067KEN7	A0A067L2R4	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	TFIID_20kDa domain-containing protein.	0.988