Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JCGZ_04353 | JCGZ_06536 | A0A067KTX1 | A0A067LHE0 | Transcriptional adapter. | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | 0.985 |
JCGZ_04353 | JCGZ_07044 | A0A067KTX1 | A0A067KEN7 | Transcriptional adapter. | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | 0.983 |
JCGZ_04353 | JCGZ_07094 | A0A067KTX1 | A0A067KET0 | Transcriptional adapter. | Uncharacterized protein. | 0.961 |
JCGZ_04353 | JCGZ_17010 | A0A067KTX1 | A0A067K5F6 | Transcriptional adapter. | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | 0.933 |
JCGZ_04353 | JCGZ_17342 | A0A067KTX1 | A0A067LLV5 | Transcriptional adapter. | SAGA-associated factor 11. | 0.950 |
JCGZ_04353 | JCGZ_17954 | A0A067KTX1 | A0A067JS69 | Transcriptional adapter. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.900 |
JCGZ_04353 | JCGZ_18712 | A0A067KTX1 | A0A067K0Y7 | Transcriptional adapter. | BTP domain-containing protein. | 0.955 |
JCGZ_04353 | JCGZ_21849 | A0A067KTX1 | A0A067JF31 | Transcriptional adapter. | Uncharacterized protein. | 0.955 |
JCGZ_04353 | JCGZ_24695 | A0A067KTX1 | A0A067KWX3 | Transcriptional adapter. | Uncharacterized protein. | 0.985 |
JCGZ_06536 | JCGZ_04353 | A0A067LHE0 | A0A067KTX1 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Transcriptional adapter. | 0.985 |
JCGZ_06536 | JCGZ_07044 | A0A067LHE0 | A0A067KEN7 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | 0.992 |
JCGZ_06536 | JCGZ_07094 | A0A067LHE0 | A0A067KET0 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Uncharacterized protein. | 0.982 |
JCGZ_06536 | JCGZ_17010 | A0A067LHE0 | A0A067K5F6 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. | 0.982 |
JCGZ_06536 | JCGZ_17342 | A0A067LHE0 | A0A067LLV5 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | SAGA-associated factor 11. | 0.868 |
JCGZ_06536 | JCGZ_17954 | A0A067LHE0 | A0A067JS69 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.972 |
JCGZ_06536 | JCGZ_18712 | A0A067LHE0 | A0A067K0Y7 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | BTP domain-containing protein. | 0.987 |
JCGZ_06536 | JCGZ_19399 | A0A067LHE0 | A0A067JZB0 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Transcriptional adapter. | 0.985 |
JCGZ_06536 | JCGZ_21849 | A0A067LHE0 | A0A067JF31 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Uncharacterized protein. | 0.987 |
JCGZ_06536 | JCGZ_24695 | A0A067LHE0 | A0A067KWX3 | Uncharacterized protein; Belongs to the PI3/PI4-kinase family. | Uncharacterized protein. | 0.993 |
JCGZ_07044 | JCGZ_04353 | A0A067KEN7 | A0A067KTX1 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | Transcriptional adapter. | 0.983 |
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