JCGZ_03984 protein (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JCGZ_03984

Uncharacterized protein. (1173 aa)

Predicted Functional Partners:

JCGZ_10112

0.837

JCGZ_03980

0.823

JCGZ_24065

0.818

JCGZ_02043

0.809

JCGZ_18047

0.793

JCGZ_05721

0.780

JCGZ_17368

0.779

JCGZ_24752

0.750

JCGZ_10363

0.741

JCGZ_10175

0.713

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02043	JCGZ_03980	A0A067L6B4	A0A067KR58	Uncharacterized protein.	Uncharacterized protein.	0.999
JCGZ_02043	JCGZ_03984	A0A067L6B4	A0A067KQY3	Uncharacterized protein.	Uncharacterized protein.	0.809
JCGZ_02043	JCGZ_05721	A0A067L6B4	A0A067LJ39	Uncharacterized protein.	Uncharacterized protein.	0.940
JCGZ_02043	JCGZ_10112	A0A067L6B4	A0A067LD23	Uncharacterized protein.	Uncharacterized protein.	0.999
JCGZ_02043	JCGZ_10175	A0A067L6B4	A0A067LNB8	Uncharacterized protein.	Uncharacterized protein.	0.944
JCGZ_02043	JCGZ_10363	A0A067L6B4	A0A067KU47	Uncharacterized protein.	Uncharacterized protein.	0.965
JCGZ_02043	JCGZ_17368	A0A067L6B4	A0A067LBC9	Uncharacterized protein.	Uncharacterized protein.	0.930
JCGZ_02043	JCGZ_18047	A0A067L6B4	A0A067K4Z6	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
JCGZ_02043	JCGZ_24065	A0A067L6B4	A0A067LEG0	Uncharacterized protein.	Uncharacterized protein.	0.955
JCGZ_02043	JCGZ_24752	A0A067L6B4	A0A067L0M9	Uncharacterized protein.	Uncharacterized protein.	0.963
JCGZ_03980	JCGZ_02043	A0A067KR58	A0A067L6B4	Uncharacterized protein.	Uncharacterized protein.	0.999
JCGZ_03980	JCGZ_03984	A0A067KR58	A0A067KQY3	Uncharacterized protein.	Uncharacterized protein.	0.823
JCGZ_03980	JCGZ_05721	A0A067KR58	A0A067LJ39	Uncharacterized protein.	Uncharacterized protein.	0.936
JCGZ_03980	JCGZ_10112	A0A067KR58	A0A067LD23	Uncharacterized protein.	Uncharacterized protein.	0.999
JCGZ_03980	JCGZ_10175	A0A067KR58	A0A067LNB8	Uncharacterized protein.	Uncharacterized protein.	0.966
JCGZ_03980	JCGZ_10363	A0A067KR58	A0A067KU47	Uncharacterized protein.	Uncharacterized protein.	0.945
JCGZ_03980	JCGZ_17368	A0A067KR58	A0A067LBC9	Uncharacterized protein.	Uncharacterized protein.	0.985
JCGZ_03980	JCGZ_18047	A0A067KR58	A0A067K4Z6	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
JCGZ_03980	JCGZ_24065	A0A067KR58	A0A067LEG0	Uncharacterized protein.	Uncharacterized protein.	0.960
JCGZ_03980	JCGZ_24752	A0A067KR58	A0A067L0M9	Uncharacterized protein.	Uncharacterized protein.	0.943