ANB71423.1 protein (Burkholderia sp. OLGA172)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANB71423.1

Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)

Predicted Functional Partners:

ANB71422.1

0.922

ANB71497.1

0.775

ANB72619.1

0.775

ANB75794.1

0.775

ANB76328.1

0.775

AYM40_30180

0.775

ANB77257.1

0.775

ANB77581.1

0.774

ANB72641.1

0.773

ANB74549.1

0.741

Your Current Organism:

Burkholderia sp. OLGA172

NCBI taxonomy Id: 1804984
Other names: B. sp. OLGA172

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB71422.1	ANB71423.1	AYM40_02835	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
ANB71423.1	ANB71422.1	AYM40_02840	AYM40_02835	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
ANB71423.1	ANB71497.1	AYM40_02840	AYM40_03270	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71423.1	ANB72619.1	AYM40_02840	AYM40_09750	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71423.1	ANB72641.1	AYM40_02840	AYM40_09875	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANB71423.1	ANB74549.1	AYM40_02840	AYM40_04880	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
ANB71423.1	ANB75794.1	AYM40_02840	AYM40_26150	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71423.1	ANB76328.1	AYM40_02840	AYM40_29210	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71423.1	ANB77257.1	AYM40_02840	AYM40_34770	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71423.1	ANB77581.1	AYM40_02840	AYM40_29520	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ANB71423.1	AYM40_30180	AYM40_02840	AYM40_30180	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB71497.1	ANB71423.1	AYM40_03270	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB72619.1	ANB71423.1	AYM40_09750	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB72641.1	ANB71423.1	AYM40_09875	AYM40_02840	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ANB74549.1	ANB71423.1	AYM40_04880	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
ANB74549.1	ANB77581.1	AYM40_04880	AYM40_29520	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
ANB75794.1	ANB71423.1	AYM40_26150	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB76328.1	ANB71423.1	AYM40_29210	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB77257.1	ANB71423.1	AYM40_34770	AYM40_02840	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
ANB77581.1	ANB71423.1	AYM40_29520	AYM40_02840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774