STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIP47917.1RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
OIP46689.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
OIP47404.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.928
OIP47382.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.922
OIP45411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.888
OIP48135.1
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.803
OIP47901.1
Transcription termination/antitermination protein NusA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.797
OIP48156.1
Elongation factor 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.712
OIP47918.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
OIP47789.1
DNA (cytosine-5-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.697
OIP48667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.669
Your Current Organism:
Flavobacteriaceae bacterium CG2303166
NCBI taxonomy Id: 1805159
Other names: F. bacterium CG2_30_31_66, Flavobacteriaceae bacterium CG2_30_31_66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.