STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIP59756.1Tol-pal system protein YbgF; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (296 aa)    
Predicted Functional Partners:
OIP59754.1
Tol-Pal system beta propeller repeat protein TolB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.962
OIP59755.1
Peptidoglycan-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.903
OIP59757.1
Cyclic pyranopterin phosphate synthase MoaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OIP59752.1
Protein TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.733
OIP59751.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.709
OIP59753.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.592
OIP60317.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.578
OIP60222.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.516
OIP58786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.509
OIP58555.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.475
Your Current Organism:
Nitrospirae bacterium CG2304142
NCBI taxonomy Id: 1805277
Other names: N. bacterium CG2_30_41_42, Nitrospirae bacterium CG2_30_41_42
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