STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIP63193.1Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
OIP63202.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
OIP63192.1
NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.955
OIP63191.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
OIP64506.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.825
OIP62965.1
Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.792
OIP62873.1
Pyruvate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.676
OIP63386.1
Succinate dehydrogenase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.642
OIP65749.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.607
OIP61844.1
Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.591
OIP61510.1
Hydrogenase 2 large subunit; Involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.586
Your Current Organism:
Nitrospirae bacterium CG2305367
NCBI taxonomy Id: 1805278
Other names: N. bacterium CG2_30_53_67, Nitrospirae bacterium CG2_30_53_67
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