STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLB42835.1Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa)    
Predicted Functional Partners:
OLB39860.1
Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.922
OLB42822.1
Bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.795
OLB40408.1
Branched chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.778
OLB40863.1
Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
   
 
 0.743
AUI04_16470
Alanine transaminase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.742
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
     
 0.737
OLB43063.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.734
OLB39512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
0.734
OLB39518.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.729
OLB41600.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.726
Your Current Organism:
Rokubacteria bacterium 13220CM2648
NCBI taxonomy Id: 1805369
Other names: C. Rokubacteria bacterium 13_2_20CM_2_64_8, Candidatus Rokubacteria bacterium 13_2_20CM_2_64_8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.