STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (227 aa)    
Predicted Functional Partners:
OLB40416.1
Transketolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.949
OLB37648.1
Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.861
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
   
 0.849
tal
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 0.848
OLB41600.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.844
OLB38626.1
6-phosphogluconate dehydrogenase (decarboxylating); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.802
OLB41654.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.787
OLB44473.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uridine kinase family.
   
 
 0.760
OLB41474.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.741
OLB41473.1
Transketolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.740
Your Current Organism:
Rokubacteria bacterium 13220CM2648
NCBI taxonomy Id: 1805369
Other names: C. Rokubacteria bacterium 13_2_20CM_2_64_8, Candidatus Rokubacteria bacterium 13_2_20CM_2_64_8
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