STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900086595_00894Unannotated protein. (536 aa)    
Predicted Functional Partners:
GCA_900086595_03019
Unannotated protein.
 
0.969
GCA_900086595_02252
Unannotated protein.
 
 0.959
GCA_900086595_00134
Unannotated protein.
 
 0.903
GCA_900086595_01008
Unannotated protein.
 
 
 0.900
GCA_900086595_01645
Unannotated protein.
 
0.841
GCA_900086595_00858
Unannotated protein.
 
 
 0.802
GCA_900086595_00893
Unannotated protein.
 
    
0.777
GCA_900086595_00892
Unannotated protein.
 
 
0.740
GCA_900086595_00776
Unannotated protein.
  
  
 0.735
GCA_900086595_01057
Unannotated protein.
  
  
 0.726
Your Current Organism:
Clostridium nigeriense
NCBI taxonomy Id: 1805470
Other names: C. nigeriense, CSUR P2414, Clostridium sp. Marseille-P2414, DSM 102218, strain Marseille-P2414
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.