STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_01022Seryl-tRNA synthetase. (435 aa)    
Predicted Functional Partners:
NEDG_00782
Phenylalanyl-tRNA synthetase alpha chain.
  
 
 0.949
NEDG_00016
Protein KTI12.
     
 0.891
NEDG_01527
Small subunit ribosomal protein S14e.
  
 
 0.875
NEDG_00203
Bifunctional glutamyl/prolyl-tRNA synthetase.
  
 
 0.837
NEDG_00023
Glycyl-tRNA synthetase.
   
  
 0.835
NEDG_00619
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.833
NEDG_00863
tRNA-binding domain-containing protein.
  
  
 0.818
NEDG_00150
Tyrosine--tRNA ligase.
  
  
 0.818
NEDG_01940
Lysine--tRNA ligase.
  
 
 0.797
NEDG_01724
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.796
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.