Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NEDG_00165 | NEDG_00225 | A0A177EJZ0 | A0A177EK50 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosome biogenesis protein NSA2. | 0.997 |
NEDG_00165 | NEDG_00322 | A0A177EJZ0 | A0A177EIU2 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Pescadillo. | 0.996 |
NEDG_00165 | NEDG_00469 | A0A177EJZ0 | A0A177EJ39 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosomal RNA methyltransferase Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.969 |
NEDG_00165 | NEDG_00488 | A0A177EJZ0 | A0A177EJ61 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | AdoMet-dependent rRNA methyltransferase SPB1. | 0.928 |
NEDG_00165 | NEDG_00752 | A0A177EJZ0 | A0A177EF52 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Uncharacterized protein. | 0.965 |
NEDG_00165 | NEDG_01033 | A0A177EJZ0 | A0A177EAC8 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | ATP-dependent RNA helicase DDX54/DBP1. | 0.726 |
NEDG_00165 | NEDG_01242 | A0A177EJZ0 | A0A177EAY3 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | RNA helicase. | 0.832 |
NEDG_00165 | NEDG_01547 | A0A177EJZ0 | A0A177EF17 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Nuclear GTP-binding protein. | 0.993 |
NEDG_00165 | NEDG_01669 | A0A177EJZ0 | A0A177EHR4 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. | 0.997 |
NEDG_00165 | NEDG_01709 | A0A177EJZ0 | A0A177EEI6 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Uncharacterized protein. | 0.807 |
NEDG_00225 | NEDG_00165 | A0A177EK50 | A0A177EJZ0 | Ribosome biogenesis protein NSA2. | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 0.997 |
NEDG_00225 | NEDG_00322 | A0A177EK50 | A0A177EIU2 | Ribosome biogenesis protein NSA2. | Pescadillo. | 0.974 |
NEDG_00225 | NEDG_00469 | A0A177EK50 | A0A177EJ39 | Ribosome biogenesis protein NSA2. | Ribosomal RNA methyltransferase Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.884 |
NEDG_00225 | NEDG_00488 | A0A177EK50 | A0A177EJ61 | Ribosome biogenesis protein NSA2. | AdoMet-dependent rRNA methyltransferase SPB1. | 0.911 |
NEDG_00225 | NEDG_00752 | A0A177EK50 | A0A177EF52 | Ribosome biogenesis protein NSA2. | Uncharacterized protein. | 0.942 |
NEDG_00225 | NEDG_01033 | A0A177EK50 | A0A177EAC8 | Ribosome biogenesis protein NSA2. | ATP-dependent RNA helicase DDX54/DBP1. | 0.736 |
NEDG_00225 | NEDG_01242 | A0A177EK50 | A0A177EAY3 | Ribosome biogenesis protein NSA2. | RNA helicase. | 0.826 |
NEDG_00225 | NEDG_01547 | A0A177EK50 | A0A177EF17 | Ribosome biogenesis protein NSA2. | Nuclear GTP-binding protein. | 0.957 |
NEDG_00225 | NEDG_01669 | A0A177EK50 | A0A177EHR4 | Ribosome biogenesis protein NSA2. | Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. | 0.979 |
NEDG_00322 | NEDG_00165 | A0A177EIU2 | A0A177EJZ0 | Pescadillo. | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 0.996 |
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