STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_01351Transcription initiation factor TFIID subunit 6. (387 aa)    
Predicted Functional Partners:
NEDG_00933
Transcription initiation factor TFIID subunit 13.
    
 0.999
NEDG_01117
Transcription initiation factor TFIID subunit 12.
   
 0.999
NEDG_00607
Transcription initiation factor TFIID subunit 11.
    
 0.999
NEDG_00736
Transcription initiation factor TFIID subunit 9B.
   
 0.999
NEDG_01364
Transcription initiation factor TFIID subunit 1.
    
 0.999
NEDG_01161
Transcription initiation factor TFIID TATA-box-binding protein.
   
 0.999
NEDG_01952
TAF4 domain-containing protein.
    
 0.999
NEDG_00140
Transcription initiation factor TFIID subunit 5.
   
 0.999
NEDG_02153
Transcription initiation factor TFIID subunit 2.
    
 0.999
NEDG_00221
Transcription initiation factor TFIID subunit 1.
    
 0.999
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.