NEDG_01158 protein (Nematocida displodere) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NEDG_01158

Transcription elongation factor B, polypeptide 1. (100 aa)

Predicted Functional Partners:

NEDG_00031

0.999

NEDG_00345

0.999

NEDG_00486

0.892

NEDG_00530

0.758

NEDG_01060

0.755

NEDG_01859

0.664

NEDG_01870

0.610

NEDG_00306

0.605

NEDG_00753

0.600

NEDG_00506

0.600

Your Current Organism:

Nematocida displodere

NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEDG_00031	NEDG_00306	A0A177EIK7	A0A177EK44	CULLIN_2 domain-containing protein; Belongs to the cullin family.	26S proteasome regulatory subunit N8.	0.441
NEDG_00031	NEDG_00345	A0A177EIK7	A0A177EKI1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein 1.	0.999
NEDG_00031	NEDG_00486	A0A177EIK7	A0A177EKM7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like protein Nedd8.	0.915
NEDG_00031	NEDG_00506	A0A177EIK7	A0A177EKP9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.571
NEDG_00031	NEDG_00753	A0A177EIK7	A0A177EDZ3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Small subunit ribosomal protein S27Ae.	0.571
NEDG_00031	NEDG_01158	A0A177EIK7	A0A177EDE8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Transcription elongation factor B, polypeptide 1.	0.999
NEDG_00031	NEDG_01859	A0A177EIK7	A0A177EGJ3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	26S proteasome regulatory subunit N11.	0.448
NEDG_00306	NEDG_00031	A0A177EK44	A0A177EIK7	26S proteasome regulatory subunit N8.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.441
NEDG_00306	NEDG_00345	A0A177EK44	A0A177EKI1	26S proteasome regulatory subunit N8.	RING-box protein 1.	0.706
NEDG_00306	NEDG_00486	A0A177EK44	A0A177EKM7	26S proteasome regulatory subunit N8.	Ubiquitin-like protein Nedd8.	0.717
NEDG_00306	NEDG_00506	A0A177EK44	A0A177EKP9	26S proteasome regulatory subunit N8.	Ubiquitin-like domain-containing protein.	0.709
NEDG_00306	NEDG_00530	A0A177EK44	A0A177EBT0	26S proteasome regulatory subunit N8.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.479
NEDG_00306	NEDG_00753	A0A177EK44	A0A177EDZ3	26S proteasome regulatory subunit N8.	Small subunit ribosomal protein S27Ae.	0.709
NEDG_00306	NEDG_01060	A0A177EK44	A0A177EBP3	26S proteasome regulatory subunit N8.	S-phase kinase-associated protein 1.	0.693
NEDG_00306	NEDG_01158	A0A177EK44	A0A177EDE8	26S proteasome regulatory subunit N8.	Transcription elongation factor B, polypeptide 1.	0.605
NEDG_00306	NEDG_01859	A0A177EK44	A0A177EGJ3	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N11.	0.999
NEDG_00306	NEDG_01870	A0A177EK44	A0A177EHB4	26S proteasome regulatory subunit N8.	Guanine nucleotide-binding protein subunit beta-2-like 1 protein.	0.530
NEDG_00345	NEDG_00031	A0A177EKI1	A0A177EIK7	RING-box protein 1.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
NEDG_00345	NEDG_00306	A0A177EKI1	A0A177EK44	RING-box protein 1.	26S proteasome regulatory subunit N8.	0.706
NEDG_00345	NEDG_00486	A0A177EKI1	A0A177EKM7	RING-box protein 1.	Ubiquitin-like protein Nedd8.	0.928