STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_00565OTU domain-containing protein. (228 aa)    
Predicted Functional Partners:
NEDG_01811
Ubiquitin-conjugating enzyme E2 D/E; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.833
NEDG_01931
Large subunit ribosomal protein L4e.
    
   0.822
NEDG_01363
Ubiquitin-conjugating enzyme E2 D/E.
    
 0.721
NEDG_00896
Uncharacterized protein.
    
 0.664
NEDG_00344
Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.594
NEDG_01219
Ubiquitin-conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.593
NEDG_01999
Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.593
NEDG_00753
Small subunit ribosomal protein S27Ae.
    
 
 0.527
NEDG_00506
Ubiquitin-like domain-containing protein.
    
 
 0.527
NEDG_00486
Ubiquitin-like protein Nedd8.
   
 
 0.500
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.