STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_02155Bromodomain and PHD finger-containing protein 1. (623 aa)    
Predicted Functional Partners:
NEDG_00531
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.766
NEDG_00691
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.766
NEDG_00731
PHD-type domain-containing protein.
    
 0.742
NEDG_00941
PHD domain-containing protein.
    
 0.735
NEDG_00331
Histone H3.
    
 0.562
NEDG_00447
Histone H3; Belongs to the histone H3 family.
    
 0.562
NEDG_01403
t-SNARE coiled-coil homology domain-containing protein.
   
 
 0.459
NEDG_00325
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.459
NEDG_00786
Replication factor C subunit 1.
    
 
 0.433
NEDG_01266
Choline/ethanolamine kinase.
      
 0.430
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.