STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_01826Ribosome production factor 1. (205 aa)    
Predicted Functional Partners:
NEDG_01329
Protein MAK16; Belongs to the MAK16 family.
   
 
 0.991
NEDG_01482
Ribosome biogenesis protein BRX1.
   
 
 0.953
NEDG_01997
ATP-dependent RNA helicase DDX18/HAS1; Belongs to the DEAD box helicase family.
   
 
 0.929
NEDG_01547
Nuclear GTP-binding protein.
   
 
 0.921
NEDG_01654
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.920
NEDG_00469
Ribosomal RNA methyltransferase Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.919
NEDG_00322
Pescadillo.
   
 
 0.914
NEDG_00730
Uncharacterized protein.
   
 
 0.912
NEDG_01815
U3 small nucleolar ribonucleoprotein IMP4.
   
 
 0.909
NEDG_01649
Large subunit ribosomal protein L24e.
   
 
 0.908
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.