STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_00496ATP-dependent RNA helicase DDX3X; Belongs to the DEAD box helicase family. (508 aa)    
Predicted Functional Partners:
NEDG_00243
NodB homology domain-containing protein.
     
 0.846
NEDG_01083
Translation initiation factor 4G.
   
 0.791
NEDG_02194
Translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.768
NEDG_00165
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.725
NEDG_00322
Pescadillo.
   
 0.717
NEDG_01337
Polyadenylate-binding protein.
   
 0.702
NEDG_01668
ATP-dependent RNA helicase DDX6/DHH1.
  
 
0.690
NEDG_01852
ATP-dependent RNA helicase DDX5/DBP2; Belongs to the DEAD box helicase family.
  
0.670
NEDG_00887
Translation initiation factor 5.
   
 0.666
NEDG_02007
ATP-dependent helicase HrpA.
  
 0.644
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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