STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0005DNA gyrase subunit B. (714 aa)    
Predicted Functional Partners:
RN08_0006
DNA gyrase subunit A; Overlaps another CDS with the same product name.
 0.999
RN08_0007
DNA gyrase subunit A; Overlaps another CDS with the same product name.
 0.999
RN08_3708
Hypothetical protein.
   
 
 0.980
RN08_0811
GCN5-like N-acetyltransferase.
  
 0.967
RN08_0003
DNA replication/repair protein RecF.
  
  
 0.953
RN08_0002
DNA polymerase III subunit beta.
  
 
 0.937
RN08_0745
DNA-directed RNA polymerase subunit beta'.
  
  
 0.875
RN08_0744
DNA-directed RNA polymerase subunit beta.
  
  
 0.866
RN08_0395
Chaperone protein DnaK.
 
 
 0.864
RN08_1802
DNA polymerase I.
  
 0.863
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (78%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.