STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0029Transcriptional regulator WhiB5. (139 aa)    
Predicted Functional Partners:
RN08_0030
Transcriptional regulator.
       0.766
RN08_3811
Membrane-anchored mycosin.
   
    0.719
RN08_3810
ESX-4 secretion system protein EccD4.
   
    0.716
RN08_3808
Alanine/valine-rich protein.
   
    0.694
RN08_0033
Hypothetical protein.
       0.684
RN08_0035
Hypothetical protein.
       0.611
RN08_0036
Hypothetical protein.
       0.611
RN08_0031
NLP/P60 family protein.
     
 0.587
RN08_0194
Mce family protein Mce1B.
      
 0.585
RN08_3769
Redox-responsive transcriptional regulator WhiB3.
      
 0.576
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.