Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0032NLP/P60 family protein. (56 aa)    
Predicted Functional Partners:
RN08_1881
Copper transporter MctB.
   
 
 0.699
RN08_0033
Hypothetical protein.
       0.692
RN08_3417
Cell division protein FtsX.
   
 
 0.687
RN08_0031
NLP/P60 family protein.
  
  
 0.669
RN08_0030
Transcriptional regulator.
       0.625
RN08_3418
Cell division ATP-binding protein FtsE.
  
 
 0.526
RN08_4315
Peptidoglycan hydrolase.
  
 
 0.504
RN08_0029
Transcriptional regulator WhiB5.
     
 0.479
RN08_2800
Hypothetical protein.
  
 
 0.468
RN08_3974
Hypothetical protein.
  
 
 0.468
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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