STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0045Hypothetical protein. (257 aa)    
Predicted Functional Partners:
RN08_0046
MFS-type transporter.
       0.810
RN08_0047
Hypothetical protein.
       0.734
RN08_1086
Hypothetical protein.
 
     0.709
RN08_0926
Hypothetical protein.
      
 0.657
RN08_1049
Hypothetical protein.
      
 0.654
RN08_0973
Transmembrane protein.
  
     0.569
RN08_3064
Hypothetical protein.
 
     0.518
RN08_1082
acyl-CoA dehydrogenase FadE12.
 
     0.499
RN08_3207
TetR family HTH-type transcriptional regulator.
 
     0.426
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.