STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0066Hypothetical protein. (173 aa)    
Predicted Functional Partners:
RN08_0067
Replicative DNA helicase.
     
 0.891
RN08_0065
50S ribosomal protein L9.
       0.735
RN08_4241
Transmembrane protein.
      
 0.657
RN08_0015
Membrane protein.
      
 0.650
RN08_0064
30S ribosomal protein S18.
       0.634
RN08_0063
Single-strand DNA-binding protein.
       0.528
RN08_0016
Cell division protein CrgA.
      
 0.520
RN08_0068
Hypothetical protein.
       0.473
RN08_0069
Hypothetical protein.
       0.450
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.