Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0085Glutamine ABC transporter permease. (349 aa)    
Predicted Functional Partners:
RN08_0086
Glutamine ABC transporter ATP-binding protein.
 
 0.999
RN08_2843
Glutamine ABC transporter ATP-binding protein.
 
 0.956
RN08_1099
Adhesion component ABC transporter ATP-binding protein.
  
 0.906
RN08_0088
Aminotransferase.
 
   
 0.624
RN08_0087
Hypothetical protein.
       0.600
RN08_3712
Hypothetical protein.
 
 
 
 0.561
RN08_1087
PE-PGRS family protein PE_PGRS16.
 
 0.557
RN08_3242
Transmembrane transport protein MmpL7.
  
   
 0.537
RN08_3227
fatty-acid--CoA ligase FadD26.
  
  
 0.519
RN08_2865
Lipoprotein.
     
 0.502
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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