Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0102Hydrogenase HycQ. (488 aa)    
Predicted Functional Partners:
RN08_0103
Formate hydrogenase HycE.
 
 0.999
RN08_0098
Oxidoreductase; Overlaps another CDS with the same product name.
 
 0.998
RN08_0100
Formate hydrogenlyase HycD.
 
 0.998
RN08_0101
Hydrogenase HycP.
 
 
 0.998
RN08_0099
Oxidoreductase; Overlaps another CDS with the same product name.
 
   
0.978
RN08_3478
NADH-quinone oxidoreductase subunit L.
 
0.974
RN08_0097
HTH-type transcriptional regulator.
 
  
 0.891
RN08_3467
NADH-quinone oxidoreductase subunit B.
 
 
 0.792
RN08_3475
NADH-quinone oxidoreductase subunit I.
  
 0.792
RN08_3469
NADH-quinone oxidoreductase subunit D.
 
 
  0.749
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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