STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_012350S ribosomal protein L28. (94 aa)    
Predicted Functional Partners:
RN08_0065
50S ribosomal protein L9.
  
 
 0.989
RN08_2280
50S ribosomal protein L33.
 
 
 0.975
RN08_0796
50S ribosomal protein L5.
  
 
 0.956
RN08_2279
30S ribosomal protein S14.
 
 
 0.956
RN08_2278
30S ribosomal protein S18.
 
 
 0.955
RN08_1092
50S ribosomal protein L32.
 
 
 0.954
RN08_0783
50S ribosomal protein L23.
  
 
 0.948
RN08_0782
50S ribosomal protein L4.
  
 
 0.938
RN08_1453
50S ribosomal protein L31.
  
 
 0.938
RN08_0784
50S ribosomal protein L2.
  
 
 0.937
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.