STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0129Transmembrane acyltransferase. (685 aa)    
Predicted Functional Partners:
RN08_0128
Integral membrane protein.
     
 0.806
RN08_1496
Integral membrane protein.
      
 0.786
RN08_0308
Hypothetical protein.
     
 0.625
RN08_1399
Hypothetical protein.
  
    0.613
RN08_0258
Acyltransferase.
  
     0.582
RN08_1402
Acyltransferase.
  
   
 0.524
RN08_1495
O-phosphoserine sulfhydrylase.
      
 0.517
RN08_2018
Membrane-bound C-5 sterol desaturase.
 
    0.466
RN08_0130
GDP-mannose 4,6-dehydratase.
  
  
 0.462
RN08_4007
UDP-glucose 4-epimerase.
  
  
 0.440
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.