STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0130GDP-mannose 4,6-dehydratase. (318 aa)    
Predicted Functional Partners:
RN08_1693
GDP-D-mannose dehydratase GmdA.
 
0.971
RN08_0131
Phosphoheptose isomerase.
 
 
 0.956
RN08_1694
Nucleotide-sugar epimerase EpiA.
  
  
 
0.912
RN08_0132
D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
 
 0.903
RN08_0761
30S ribosomal protein S12.
   
 0.873
RN08_0133
D-alpha-D-heptose-7-phosphate kinase HddA.
 
  
 0.871
RN08_0785
30S ribosomal protein S19.
   
  0.843
RN08_0787
30S ribosomal protein S3.
   
 0.833
RN08_0790
30S ribosomal protein S17.
   
 0.832
RN08_0801
30S ribosomal protein S5.
   
 0.825
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.