STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0132D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase. (190 aa)    
Predicted Functional Partners:
RN08_0133
D-alpha-D-heptose-7-phosphate kinase HddA.
 
 
 0.999
RN08_0131
Phosphoheptose isomerase.
 
 
 0.995
RN08_1772
Histidinol dehydrogenase.
  
 0.924
RN08_0130
GDP-mannose 4,6-dehydratase.
 
 0.903
RN08_1775
Imidazole glycerol phosphate synthase subunit HisH.
  
 
 0.901
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
  
 
 0.896
RN08_2269
Polyketide synthase.
  
 0.889
RN08_1046
Multifunctional non-homologous end joining DNA repair protein/ATP dependent DNA ligase LigD.
  
 0.861
RN08_1773
Histidinol-phosphate aminotransferase.
  
 
 0.851
RN08_2477
Aminotransferase; Overlaps another CDS with the same product name.
  
 
 0.851
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.