STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0137oxalyl-CoA decarboxylase OxcA. (582 aa)    
Predicted Functional Partners:
RN08_3314
Acetolactate synthase small subunit.
 
 0.972
RN08_3313
Ketol-acid reductoisomerase.
 
 
 0.916
RN08_0138
fatty-acid--CoA ligase FadD7.
  
 0.862
RN08_1748
Threonine dehydratase IlvA.
  
 0.828
RN08_3305
3-isopropylmalate dehydrogenase.
 
 0.792
RN08_0459
Phosphate acetyltransferase.
  
 
 0.745
RN08_2721
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.740
RN08_2453
Branched-chain amino acid aminotransferase.
  
 0.735
RN08_3609
Hypothetical protein.
 
 
 0.735
RN08_0951
fatty-acid-CoA racemase.
 
 
 0.703
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.