STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0152F420-dependent glucose-6-phosphate dehydrogenase. (360 aa)    
Predicted Functional Partners:
RN08_3597
Coenzyme F420:L-glutamate ligase.
 
 
 0.897
RN08_3596
2-phospho-L-lactate transferase.
 
   
 0.853
RN08_1318
FO synthase.
 
  
 0.804
RN08_3292
2-phospho-L-lactate guanylyltransferase.
 
   
 0.803
RN08_3923
Deazaflavin-dependent nitroreductase.
  
   
 0.790
RN08_0053
Oxidoreductase.
  
     0.764
RN08_3502
Nitroreductase.
  
   
 0.743
RN08_0151
acyl-CoA dehydrogenase FadE1.
  
 
  0.741
RN08_3895
Coenzyme F420-dependent oxidoreductase.
  
     0.727
RN08_1747
Hypothetical protein.
  
   
 0.722
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.