STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0175Phosphotyrosine protein phosphatase. (276 aa)    
Predicted Functional Partners:
RN08_3479
NADH-quinone oxidoreductase subunit M.
    
 0.985
RN08_2480
Protein-tyrosine-phosphatase.
    
 0.964
RN08_0176
acyl-CoA dehydrogenase FadE2.
 
    0.900
RN08_3610
Transmembrane carbonic anhydrase.
   
  0.848
RN08_1896
Transmembrane protein.
   
  0.844
RN08_1933
Sulfate ABC transporter permease.
   
  0.844
RN08_2546
Cutinase.
  
 0.840
RN08_4107
Cutinase Cut5b.
  
 0.840
RN08_1955
Cutinase.
  
 0.839
RN08_3813
Cutinase.
  
 0.839
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.