STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0188Transcriptional regulator Mce1R. (271 aa)    
Predicted Functional Partners:
RN08_0192
Mce family protein Mce1A; Overlaps another CDS with the same product name.
     
 0.751
RN08_0052
HTH-type transcriptional regulator.
  
     0.662
RN08_0189
fatty-acid--CoA ligase FadD5.
  
  
 0.656
RN08_3371
GntR family transcriptional regulator.
 
  
 0.622
RN08_0658
HTH-type transcriptional regulator Mce2R.
 
  
 0.615
RN08_0550
HTH-type transcriptional regulator.
 
  
 0.599
RN08_3314
Acetolactate synthase small subunit.
  
    0.571
RN08_0242
Transcriptional regulator NadR.
   
  
 0.547
RN08_1974
Transcriptional regulator.
 
  
 0.505
RN08_0885
Transcriptional regulator.
 
   
 0.483
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.