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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0192Mce family protein Mce1A; Overlaps another CDS with the same product name. (417 aa)    
Predicted Functional Partners:
RN08_0190
Membrane protein.
 
 0.998
RN08_0191
Membrane protein.
 
 0.991
RN08_0195
Mce family protein Mce1C.
 
  
 0.989
RN08_0194
Mce family protein Mce1B.
 
  
 0.987
RN08_0198
Mce family protein Mce1F.
 
  
 0.987
RN08_0196
Mce family protein Mce1D.
 
  
 0.972
RN08_0197
Mce family lipoprotein LprK.
 
  
 0.969
RN08_2184
Integral membrane protein.
 
 0.940
RN08_0731
Ribonucleotide ABC transporter ATP-binding protein.
 
 0.935
RN08_0660
Hypothetical protein.
 
 0.926
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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