STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0343Ribonuclease VapC2. (141 aa)    
Predicted Functional Partners:
RN08_0342
Antitoxin VapB2.
  
 
 0.998
RN08_0340
Antitoxin.
       0.674
RN08_0341
Toxin.
       0.674
RN08_0682
Ribonuclease VapC28.
  
  
 0.628
RN08_0699
Antitoxin VapB5.
   
 
 0.618
RN08_0671
Ribonuclease VapC27.
     
 0.585
RN08_0667
Ribonuclease VapC4.
  
   
 0.569
RN08_0344
Transcriptional regulator.
  
    0.549
RN08_0700
Ribonuclease VapC5.
      
 0.526
RN08_0697
Ribonuclease VapC30.
   
  
 0.525
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.