Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0352Integral membrane protein. (238 aa)    
Predicted Functional Partners:
RN08_0353
Hypothetical protein.
 
     0.784
RN08_0351
Hypothetical protein.
       0.759
RN08_0799
50S ribosomal protein L6.
   
 0.684
RN08_2269
Polyketide synthase.
   
 0.652
RN08_1400
Lipoprotein LprE.
    
 0.634
RN08_4200
Decaprenyl-phosphate phosphoribosyltransferase.
  
 
 0.582
RN08_2027
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
  
 
 0.552
RN08_2893
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
 
 0.552
RN08_3032
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
  
 
 0.552
RN08_3252
long-chain-fatty-acid--AMP ligase FadD29.
  
 
  0.552
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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